Chromatin Immunoprecipitation (ChIP)

Antigen-Antibody Specific Applications




Androgen Response Genes

Takayama K, Kaneshiro K, Tsutsumi S, Horie-Inoue K, Ikeda K, Urano T, Ijichi N, Ouchi Y, Shirahige K, Aburatani H, Inoue S.

Identification of novel androgen response genes in prostate cancer cells by coupling chromatin immunoprecipitation and genomic microarray analysis.
Oncogene. 2007 Feb 5; [Epub ahead of print]
PMID: 17297473 [PubMed - as supplied by publisher]



Lo AW, Magliano DJ, Sibson MC, Kalitsis P, Craig JM, Choo KH.

A novel chromatin immunoprecipitation and array (CIA) analysis identifies a 460-kb CENP-A-binding neocentromere DNA.
Genome Res. 2001 Mar;11(3):448-57.
PMID: 11230169 [PubMed - indexed for MEDLINE]


Chromosomal Proteins

Orlando V.

Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation.
Trends Biochem Sci. 2000 Mar;25(3):99-104. Review.
PMID: 10694875 [PubMed - indexed for MEDLINE]



Oh SW, Mukhopadhyay A, Dixit BL, Raha T, Green MR, Tissenbaum HA.

Identification of direct DAF-16 targets controlling longevity, metabolism and diapause by chromatin immunoprecipitation.
Nat Genet. 2006 Feb;38(2):251-7. Epub 2005 Dec 25.
PMID: 16380712 [PubMed - indexed for MEDLINE]



Birkaya B, Ortt K, Sinha S.

Novel in vivo targets of deltaNp63 in keratinocytes identified by a modified chromatin immunoprecipitation approach.
BMC Mol Biol. 2007 May 23;8(1):43 [Epub ahead of print]
PMID: 17521434 [PubMed - as supplied by publisher]


Estrogen Receptor

Lin Z, Reierstad S, Huang CC, Bulun SE.

Novel estrogen receptor-alpha binding sites and estradiol target genes identified by chromatin immunoprecipitation cloning in breast cancer.
Cancer Res. 2007 May 15;67(10):5017-24.
PMID: 17510434 [PubMed - in process]

Ray S, Das SK.

Chromatin immunoprecipitation assay detects ERalpha recruitment to gene specific promoters in uterus.
Biol Proced Online. 2006;8:69-76. Epub 2006 Jul 31.
PMID: 17033697 [PubMed - in process]

Jin VX, Leu YW, Liyanarachchi S, Sun H, Fan M, Nephew KP, Huang TH, Davuluri RV.

Identifying estrogen receptor alpha target genes using integrated computational genomics and chromatin immunoprecipitation microarray.
Nucleic Acids Res. 2004 Dec 17;32(22):6627-35. Print 2004.
PMID: 15608294 [PubMed - indexed for MEDLINE]


Glucocorticoid Receptor

Wang JC, Derynck MK, Nonaka DF, Khodabakhsh DB, Haqq C, Yamamoto KR.

Chromatin immunoprecipitation (ChIP) scanning identifies primary glucocorticoid receptor target genes.
Proc Natl Acad Sci U S A. 2004 Nov 2;101(44):15603-8. Epub 2004 Oct 22.
PMID: 15501915 [PubMed - indexed for MEDLINE]



Eberhardy SR, D'Cunha CA, Farnham PJ.

Direct examination of histone acetylation on Myc target genes using chromatin immunoprecipitation.
J Biol Chem. 2000 Oct 27;275(43):33798-805.
PMID: 10931841 [PubMed - indexed for MEDLINE]


Mycobacterial Sigma Factor

Rodrigue S, Brodeur J, Jacques PE, Gervais AL, Brzezinski R, Gaudreau L.

Identification of mycobacterial sigma factor binding sites by chromatin immunoprecipitation assays.
J Bacteriol. 2007 Mar;189(5):1505-13. Epub 2006 Dec 8.
PMID: 17158685 [PubMed - indexed for MEDLINE]


NF-kappa B

Nowak DE, Tian B, Brasier AR.

Two-step cross-linking method for identification of NF-kappaB gene network by chromatin immunoprecipitation.
Biotechniques. 2005 Nov;39(5):715-25.
PMID: 16315372 [PubMed - indexed for MEDLINE]


PR-1a and CaMV 35S Promoter

Butterbrodt T, Thurow C, Gatz C.

Chromatin immunoprecipitation analysis of the tobacco PR-1a- and the truncated CaMV 35S promoter reveals differences in salicylic acid-dependent TGA factor binding and histone acetylation.
Plant Mol Biol. 2006 Jul;61(4-5):665-74.
PMID: 16897482 [PubMed - indexed for MEDLINE]


Protein Kinase C beta

Hug BA, Ahmed N, Robbins JA, Lazar MA.

A chromatin immunoprecipitation screen reveals protein kinase Cbeta as a direct RUNX1 target gene.
J Biol Chem. 2004 Jan 9;279(2):825-30. Epub 2003 Oct 15.
PMID: 14561740 [PubMed - indexed for MEDLINE]



Nelson EA, Walker SR, Alvarez JV, Frank DA.

Isolation of unique STAT5 targets by chromatin immunoprecipitation-based gene identification.
J Biol Chem. 2004 Dec 24;279(52):54724-30. Epub 2004 Oct 20.
PMID: 15498775 [PubMed - indexed for MEDLINE]



Hearnes JM, Mays DJ, Schavolt KL, Tang L, Jiang X, Pietenpol JA.

Chromatin immunoprecipitation-based screen to identify functional genomic binding sites for sequence-specific transactivators.
Mol Cell Biol. 2005 Nov;25(22):10148-58.
PMID: 16260627 [PubMed - indexed for MEDLINE]


Transcription Factors

Ji H, Vokes SA, Wong WH.

A comparative analysis of genome-wide chromatin immunoprecipitation data for mammalian transcription factors.
Nucleic Acids Res. 2006;34(21):e146. Epub 2006 Nov 7.
PMID: 17090591 [PubMed - indexed for MEDLINE]

Girard F, Joly W, Savare J, Bonneaud N, Ferraz C, Maschat F.

Chromatin immunoprecipitation reveals a novel role for the Drosophila SoxNeuro transcription factor in axonal patterning.
Dev Biol. 2006 Nov 15;299(2):530-42. Epub 2006 Aug 10.
PMID: 16979619 [PubMed - indexed for MEDLINE]

Dryer RL, Covey LR.

Use of chromatin immunoprecipitation (ChIP) to detect transcription factor binding to highly homologous promoters in chromatin isolated from unstimulated and activated primary human B cells.
Biol Proced Online. 2006;8:44-54. Epub 2006 Apr 21.
PMID: 16799696 [PubMed - in process]

Peng GH, Chen S.

Chromatin immunoprecipitation identifies photoreceptor transcription factor targets in mouse models of retinal degeneration: new findings and challenges.
Vis Neurosci. 2005 Sep-Oct;22(5):575-86.
PMID: 16332268 [PubMed - indexed for MEDLINE]